* using log directory 'd:/Rcompile/CRANpkg/local/4.5/algaeClassify.Rcheck' * using R version 4.5.1 (2025-06-13 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'algaeClassify/DESCRIPTION' ... OK * this is package 'algaeClassify' version '2.0.4' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'algaeClassify' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s] OK * checking whether the package can be loaded with stated dependencies ... [0s] OK * checking whether the package can be unloaded cleanly ... [0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s] OK * checking whether the namespace can be unloaded cleanly ... [0s] OK * checking loading without being on the library search path ... [0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [4s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [1s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [15s] ERROR Running examples in 'algaeClassify-Ex.R' failed The error most likely occurred in: > ### Name: gnr_df > ### Title: Wrapper function to apply gnr_simple across a data.frame or list > ### of species names > ### Aliases: gnr_df > > ### ** Examples > > data(lakegeneva) > #example dataset with 50 rows > > lakegeneva<- genus_species_extract(lakegeneva,'phyto_name') > lakegeneva$genus_species <- trimws(paste(lakegeneva$genus, + lakegeneva$species)) > > #checking for matches from all GNRS sources, first 5 rows: > lakegeneva.namematches <- gnr_df(lakegeneva,"genus_species") Warning: Failed to open 'https://verifier.globalnames.org/api/v1/verifications/Monoraphidium+convolutum%7CCeratium+hirundinella%7CAphanizomenon+flos-aquae%7CPeridinium+willei%7CSphaerocystis+schroeteri%7CEudorina+elegans%7CFragilaria+crotonensis%7CChlamydomonas+globosa%7CPlagioselmis+nannoplanctica%7CMougeotia+gracillima%7CStephanodiscus+neoastraea%7CHyaloraphidium+contortum%7CMonoraphidium+minutum%7CPlagioselmis+lacustris%7CGymnodinium+lantzschii%7CDinobryon+divergens%7CStephanodiscus+neoastraea%7CSphaerocystis+schroeteri%7CFragilaria+crotonensis%7CAsterionella+formosa%7CCeratium+hirundinella%7CPlagioselmis+nannoplanctica%7COscillatoria+janus%7CDiatoma+tenuis%7CPlagioselmis+nannoplanctica%7CPlanktothrix+rubescens%7CSynechococcus+elongatus%7CStaurastrum+cingulum%7CPlagioselmis+lacustris%7CPseudanabaena+limnetica%7CChlamydomonas%7CPlagioselmis+lacustris%7CGymnodinium%7CMougeotia+gracillima%7COchromonas%7CClosterium+aciculare%7COchromonas%7CPlagioselmis+nannoplanctica%7CMonoraphidium+convolutum%7 [... truncated] Error: lexical error: invalid char in json text. Error in readLines(con, warn = (right here) ------^ Execution halted * checking PDF version of manual ... [22s] OK * checking HTML version of manual ... [5s] OK * DONE Status: 1 ERROR