AU_adj                  Adjacency matrix for focal and adjacent
                        assemblages
AU_grid                 Australia grid map
CpB                     Calculates the rate of accumulation of
                        phylogenetic B-diversity (CpB) over time slices
CpB_RW                  Calculates the range weighted rate of
                        accumulation of phylogenetic B-diversity
                        (CpB_RW) over time slices
CpD                     Calculates the rate of accumulation of
                        phylogenetic diversity (CpD) over time slices
CpE                     Calculates the rate of accumulation of
                        phylogenetic endemism (CpE) over time slices
CpR_graph               Make a line graph or a grid map of estimated
                        rates of accumulation of a given phylogenetic
                        index.
CpR_sensitivity         Runs a sensitivity analysis for rates of
                        accumulation of a given phylogenetic index
CpR_sensitivity_plot    Make a plot of the sensitivity analysis
                        evaluated under cumulative phylogenetic rate
                        functions
DR                      Calculate the tip diversification rates (DR)
                        for a phylogenetic tree
nodes_config            Capture general branching information for an
                        inputted phylogenetic tree
pass_mat                Presence-absence matrix of Australian
                        passeriformes
pass_trees              Phylogenetic tree of passerines from Australia
phylo_pieces            Slices a phylogenetic tree into multiple
                        temporal slices
prune_tips              Collapse the tips of a phylogenetic tree based
                        on a temporal threshold
r_phylo                 Calculates the relative value of a phylogenetic
                        index in a temporal sequence of phylogenetic
                        slices.
squeeze_int             Slices a temporal interval within a
                        phylogenetic tree
squeeze_root            Slices a phylogenetic tree following a
                        'rootward' orientation
squeeze_tips            Slices a phylogenetic tree following a
                        'tipward' orientation
