* using log directory 'd:/Rcompile/CRANpkg/local/4.6/geneHapR.Rcheck'
* using R Under development (unstable) (2025-10-13 r88918 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'geneHapR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'geneHapR' version '1.2.4'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'geneHapR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [15s] OK
* checking whether the package can be loaded with stated dependencies ... [14s] OK
* checking whether the package can be unloaded cleanly ... [14s] OK
* checking whether the namespace can be loaded with stated dependencies ... [14s] OK
* checking whether the namespace can be unloaded cleanly ... [13s] OK
* checking loading without being on the library search path ... [14s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [41s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [5s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [16s] ERROR
Running examples in 'geneHapR-Ex.R' failed
The error most likely occurred in:

> ### Name: LDheatmap
> ### Title: This function produces a pairwise LD plot.
> ### Aliases: LDheatmap plot_LDheatmap
> 
> ### ** Examples
> 
> # Pass LDheatmap a SnpMatrix object
> data(geneHapR_test)
> plot_LDheatmap(hap = hapResult,
+                gff = gff,
+                Chr = hapResult[1,2],
+                start = 4000, end = 8200)
Warning in LDheatmap(gdat, gff = gff, Chr = Chr, start = start, end = end,  :
  Only bi-alleles supported,Variables with less or more than 2 allels will be omitted.
Loading required namespace: GenomeInfoDb
Failed with error:  'there is no package called 'GenomeInfoDb''
Error in h(simpleError(msg, call)) : 
  error in evaluating the argument 'i' in selecting a method for function '[': unable to load required package 'GenomeInfoDb'
Calls: plot_LDheatmap ... vapply -> FUN -> is -> getClassDef -> .requirePackage
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [14s] OK
  Running 'testthat.R' [14s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [5s] OK
* checking PDF version of manual ... [21s] OK
* checking HTML version of manual ... [9s] OK
* DONE
Status: 1 ERROR