abouheif                Compute the Abouheif distance matrix
chisq_test              Perform Chi-Square Test on Sets of Transmission
                        Trees
euclidean               Calculate the Euclidean distance between two
                        distance matrices.
kendall                 Compute the Kendall distance matrix
make_tree               Generate a Transmission Tree
patristic               Compute the Patristic distance matrix
permanova_test          Perform PERMANOVA on Sets of Transmission Trees
shuffle_graph_ids       Shuffle Node IDs in a Graph
tree_test               Test Differences Between Sets of Transmission
                        Trees
validate_tree           Validate a Transmission Tree
